this is a new one for me and I am scratching my head!
First the basic info:
- Windows 10
- CP 4.0.7
The pipeline used to run just fine and I have managed to run all the steps until Export to Spreadsheet whigh gives this weird error.
I have also tried re-creating the pipeline and get the same error.
In addition I have the following warnings in the terminal
cellprofiler\modules\saveimages.py:751: UserWarning: E:\_OUTPUT\_RUNS\RUN_Endo\CP_Output\Untreated_20180427_Pos01_cl16_NucleiLabel\Untreated_20180427_Pos01_cl16_Nuclei-label-0.tiff is a low contrast image cellprofiler\modules\relateobjects.py:617: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. cellprofiler\modules\saveimages.py:751: UserWarning: E:\_OUTPUT\_RUNS\RUN_Endo\CP_Output\Untreated_20180427_Pos01_cl16\Untreated_20180427_Pos01_cl16_NucleiClassesTelo\Untreated_20180427_Pos01_cl16_classtelo_0.png is a low contrast image
I am at a loss as it worked and I just added an additional Filter (by areashape) but I still have objects so it is not an issue of having nothing to track (plus in test mode all modules until export run fine).