ExportToSpreadsheet: Getting data per field rather than per object - Help for a Newbie

[Jim_Hackland]

Hi All,

I have a simple pipeline based on the ExamplePercentPositive template using nuclear staining images. I want my data to show number of cells, number of cells positive for a marker, and number of cells double positive for two markers (using IdentifyPrimaryObjects and RelateObjects modules) - and I want it per image in a single spreadsheet. Problem is the ExportToSpreadsheet module gives me all of those as separate files for each image and for each object. I can’t seem to find out how to change this! Can Someone help me please?

Apologies for seeking help on something so simple - I just can’t seem to find an answer!

Jim

[lakshmi (Lakshmi Balasubramanian)]

Hi,
My understanding from your derscription is that you need per image data in a csv file. In case, now if your output is not giving Image.csv, then just check that if you have enabled the option (“Calcualte the per-image…” in ExportToSpreadsheet as seen below.
If this is not working then, we could help you better if you could share your pipeline.

Regards,
Fujifilm Wako Automation (Consultant)
www.wakoautomation.com
For Cellprofiler training or optimised pipeline write to,
lakshmi.balasubramanian.contractor@fujifilm.com

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[Jim_Hackland]

Hi Lakshmi,

Thanks for your help!

After making the changes you suggested and playing around with the select measurements options I eventually got what I wanted.

Jim