I was wondering whether in KNIME we have the possibility to export ROI outlines after performing segmentation (as done with the Connected Component node in KNIME). Basically, I was thinking about two things:
- For each connected component, get the pixel coordinates of the outline describing the segmented object.
- Ideally, I would love to have those in a format that is comparable to the ROI manager objects in ImageJ. It would be great, if I could perform a segmentation in KNIME, save the obtained ROIs and then open them in Fiji.
I would be very happy about any kind of ideas how to tackle this…