I have created a pipeline to measure the intensity of a labelling of my cells (images attached).
In the pipeline I can manage to exclude the cells that are not double labelled with another probe. I do the selection manually - image attached (screen shot of the CellProfiler window).
My problem is in exporting the data.
I’m trying to export a list of the intensity values of each object, and not only the total. But so far I have failed.
Thanks for any input / helpkassie-version2.cpproj (1.1 MB)