Greetings,
I’ve been using the Imaris Filament Tracer to annotate some 3D images, and it looks great, but now I need to extract the traces for downstream processing. Is there a way to binarize these traces and export them as skeletons? I have the Imaris/Fiji bridge but haven’t figured out a way to extract the traces, just the image itself.
I didn’t find any other related topics on the forum but if I missed an extant thread let me know!
Thanks,
Emily