my aim is to draw a square inside an image and perform the annotations there. At the end I want to save this image but not all the image only the square with the annotations. To do this I am using qupath 0.2.0 m11 and I am running this script : https://raw.githubusercontent.com/mpicbg-csbd/stardist/master/extras/qupath_export_annotations.groovy
this is a script that allows me to export the info from qupath to stardist.
With the script I am able to export all the image but I am not able ( I do not know how to do it) to export only the square I draw with the annotations inside
can you help me?