I’ve been trying to establish a connection between our Omero server at out institution with Cellprofiler(3.1.5) for high-throughput image analysis.
I’ve followed the guide at (https://github.com/CellProfiler/CellProfiler/wiki/OMERO:-Accessing-images-from-CellProfiler) without success, and from my understanding that guide is quite outdated and is not the way to do it. Whatever I try to read into Cellprofiler, it wont understand it as login-credentials to Omero (tried Csv, ice.config, .py and URL)
I’ve also looked into this post (https://www.openmicroscopy.org/community/viewtopic.php?f=4&t=7821) where they clearly get a connection to omero through a simple csv file. When I attempt this, it only loads the file as omero.csv without actually reading it.
Im on a mac running the latest OS, with the latest update of java (8). The Omero server is up and running as I can access it through alternative methods (Matlab & Fiji) so there is no problem on that side.
Can anyone help me/direct me to a solution?
Thanks in advance,