Error while trying to save a manual cropping


I’m trying to save a cropping of an image that I’m doing manually using CellProfiler and I get the following error message:

Traceback (most recent call last):
File “cellprofiler\pipeline.pyc”, line 1934, in run_image_set
File “cellprofiler\modules\saveimages.pyc”, line 471, in run
File “cellprofiler\modules\saveimages.pyc”, line 515, in run_image
File “cellprofiler\modules\saveimages.pyc”, line 698, in save_image
File “cellprofiler\modules\saveimages.pyc”, line 621, in do_save_image
File “bioformats\formatwriter.pyc”, line 114, in write_image
File “cellprofiler\utilities\jutil.pyc”, line 415, in run_script
JavaException: Unknown type: ‘bit’

Does it have something to do with the type of image I’m saving or with the directory?

detecaoneuronios5.cpproj (418 KB)

Hi Daniel,

This looks to be a bug that was fixed: … ssues/1215

You can try a new trunk version of CP here that will have the fix (plus other changes!):