We are having issues with integrating the RunImageJ module in a pipeline.
It appears IJ doesn’t load up and we get the following error:
Traceback (most recent call last):
File “cellprofiler\pipeline.pyc”, line 306, in run
File “cellprofiler\modules\run_imagej.pyc”, line 277, in run
File “imagej\imageprocessor.pyc”, line 50, in make_image_processor
File “cellprofiler\utilities\jutil.pyc”, line 653, in make_instance
What are we doing wrong? We are not programming experts by any stretch of the imagination, so be kind!
We’ve tried tinkering with tick boxes and options within the CP interface; We’ve even removed IJ from the computer so that the only one that can be loaded is .jar file one within CP. All to no avail.
Thanks in advance for your help.