Error "Score All" in CellProfiler Analyst 2.2.1 for Windows

Hi all,

I have been running into issues with CellProfiler Analyst, in particular when trying to “Score All” my images I receive the following error message:

TypeError: ufunc ‘isinf’ not supported for the input types, and the inputs could not be safely coerced to any supported types according to the casting rule ‘‘safe’’

Traceback (most recent call last):
File “cpa\classifier.pyc”, line 1580, in ScoreAll
File “cpa\generalclassifier.pyc”, line 117, in PerImageCounts
File “cpa\multiclasssql.pyc”, line 277, in PerImageCounts
File “cpa\multiclasssql.pyc”, line 255, in do_by_steps
File “cpa\multiclasssql.pyc”, line 157, in processData
File “numpy\lib\type_check.pyc”, line 374, in nan_to_num
File “numpy\lib\ufunclike.pyc”, line 113, in isposinf

I get the same error message when trying to “Fetch Positive/Negative/Uncertain” images. Basically I can only fetch “random” images to train the classifier.

Has anyone had the same problem recently, and found a possible solution?

Thanks,

Alexander

I am having the same issue.

Hi @Randy_Strauss @AlexanderJ,

I am not if you had a chance to have alook at this thread, it might worth to have alook at this

Hope this helps!!
Regards,
Lakshmi
Fujifilm Wako Automation (Consultant)
www.wakoautomation.com
For CellProfiler training or optimised pipeline write to,
lakshmi.balasubramanian.contractor@fujifilm.com

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