Since Bioformats can open xml/hdf5 datasets from Bigdataviewer, I’ve decided to have a look at such a dataset on QuPath. To do that:
- I added the latest (28th Nov 2019)
bioformats_package.jarfrom bioformats website in QuPath extensions folder. However, when I try to import a xml/hdf5 dataset, QuPath gives me an error (not informative : just cannot open file).
- Since Fiji and the Bioformats importer can open my bdv dataset, in Fiji, I copy-pasted all jars in the Bioformats folder into QuPath extensions directory:
This time, QuPath is not displaying an error message… but it hangs forever.
Has any of you got any luck with QuPath and Xml/Hdf5 files ?
- I’m using QuPath v0.1.4 on Win 10.
- Link to the dataset https://drive.switch.ch/index.php/s/72UCIVK7AJJPCpB (230Mo)