I’ve been working with CP 2.0 for more than a year now and was doing some adjustements to a pipeline that actually ran pretty well (already had 35.000 images calculated with about 1 min time for each, so it did run some time …). However after CP is done calculating one set of images (1350) and the only thing left done is to export the data, I get the following error message. The csv files are not saved except the VSMCNuclei.csv
Traceback (most recent call last):
File “cellprofiler\pipeline.pyc”, line 1268, in post_run
File “cellprofiler\modules\exporttospreadsheet.pyc”, line 390, in post_run
File “cellprofiler\modules\exporttospreadsheet.pyc”, line 439, in run_objects
File “cellprofiler\modules\exporttospreadsheet.pyc”, line 740, in make_object_file
TypeError: int() argument must be a string or a number, not ‘NoneType’
The funny part is, I applied small changes in other modules, but I didn’t mess around with the data part. I copied a few example images and tried the pipeline, since I don’t want to wait a day again to see if it CAN work and yet it did. No problems at all, only when I have it run on all 1350 pictures. However, I’ve always had this amount of data and it used to work.
So can could you please help me to understand what that error means?
I only included the pipeline, let me know if you need example images as well.
Thanks a lot, Matthias Roeper
Pipeline 20111128-180.cp (23.6 KB)