Error message for measuring object size and shape

Hi!
I get an error message saying that index is out of boundaries when I run the attached pipeline on the attached images (only a subset). It seems like there is a problem in image 33 (c4) to identify the objects and measure their area. I get output data but for the objects in image 33 (c4) there is no information available for the five objects identified. Is this perhaps a bug? I have successfully used the same pipeline on another image set.

Thanks for your help.

Best wishes,
Elin
PCDH11_processing_E27.cpproj (714 KB)











Hi,
Thanks for reporting this. I too got an error using the 2.1.1 release, and also a different warning in the most current trunk build. I reported this here: github.com/CellProfiler/CellPro … ssues/1270

I would guess it has to do with masking when there are no objects present either before or after the masking, but in any case, we’ll take a closer look.

Thanks,
David

Hi,
We believe we have fixed this issue. Would you try this new “trunk build”? cellprofiler.org/cgi-bin/trunk_build.cgi
Please read the caveats.

Cheers,
David