I have been slowly learning to use CellProfiler. I have recently implemented ilastik learning modules to enhance my classification. It seems to be going well, until today. I keep trying to analyze a dataset and it shuts down 58/81 images into the analysis. I have used the pipeline on another smaller dataset without a problem so I am not sure what to make of the abrupt inability to run it, except that it might be time to upgrade from r11710 to v2- (more on that below). The Error message:
DataMgr initalizing module: Classification Adding new overlay Classification/Labels #Fatal phython error PyEval_SaveThread: NULL tstate This application has requested the Runtime to terminate it in an unusual way. Please contact the application's support team for more info. Exception in Feature Thread Precondition violation! convolveLine <>: kernel longer than line None
At first I tried restarting my computer but that did not help! Feeling a bit stuck, I tried to upgrade. But the new software does not open. The command prompt window opens, flashes some writing including WARNING, but I can’t read the rest before it shuts down. I am not feeling particularly tech savvy at the moment and would be grateful for your suggestions. I have made great progress on my image analysis using CellProfilier (on my Window 7-64 bit) and I would like to finish it!! I couldn’t find any other threads for trouble installing CellProfilier v2 or this error message.