Error in processing 3D image CellProfiler 3.1.5

cellprofiler
segmentation

#1

Hello,

I keep getting this error when running a Z-stack of images.

Error while processing (remote worker):

(Worker) IOError: Unable to open file (truncated file: eof = 106496, sblock->base_addr = 0, stored_eof = 1060376)

Please let me know if there’s any fix to this.

Best,
Parakh
BCG_Z-Stack.cpproj (143.9 KB)


#2

Hi,

I can’t fully troubleshoot this without the images, but a) your grouping looks off, try disabling that and see if the pipeline runs and b) make sure the image isn’t corrupted.