There is an error that shows up while executing as well as before regarding ovelayoutlines and I’m unable to understand why.
Will you be able to share your pipeline. It shows error in Overlayoutlines, in this screenshot we could see that.
Sure, Please find attached the pipeline for the same.Microglia_Morphology_Pipeline_10X.cpproj (165.9 KB)
Thank you for your willingness to help!
The error in the screenshot (
SomeMeasurement is not one of the choices) can happen sometimes when you have explicitly set which measurements you want in ExportToSpreadsheet (by setting “Select the measurements to export” to “Yes”), then moved or deleted some modules (since now some of the measurements you explicitly set are gone). If you simply press the “Press button to select measurements” button, then hit “OK” on the window that pops up, the error should immediately resolve.
Thanks. bcimini is right. Follow the mentioned steps and just click “OK”. It works.
Yes, this seems to work! Thank you so much for the input.