I created a series of tiff stacks with numpy / tifffile and now would like to read them as a virtual stack (all concatenated in a single dimension) into Fiji.
When I drag’n’drop the containing folder in the Window the “Open folder” window pops-up and I check “Use Virtual Stack” since the data does not fit into RAM.
After pressing “OK”, the error log pops-up with this message:
[ERROR] *** One or more readers is misbehaving. See the debug output for more information. e.g.: loci.formats.in.APLReader@44d5ae84 -> java.lang.NullPointerException('null') *** Reading IFDs Populating metadata Checking comment style Populating OME metadata
and all stacks are loaded shown individually in separate Fiji windows.
This should be a very straight forward workflow, but now I already spent way too much time on it.