I added a line to my properties file so that its output will be based on well not image. Here is the code:
group_SQL_Well+Plate = SELECT cellprofiler_DATABASE_Per_Image.ImageNumber, cellprofiler_DATABASE_Per_Image.Image_Metadata_Plate, cellprofiler_DATABASE_Per_Image.Image_Metadata_Well FROM cellprofiler_DATABASE_Per_Image
When I try to score all my images based on the grouping I defined, it crashes. By crashing I mean that it has been 24 hours and it is still at 99 percent.
When I ran the program using the score per image, it works perfectly fine and it gives me a table.
I work with python and I would like to use this cvs file in python. Since the program crashes when it is per well, What is the best way to combine enrichment scores? Since I have 9 image per well, and when I run it per image I get enrichment score per image. I would like to get enrichment score per well.