EditObjectsManually Error


I am relatively new to Cell Profiler, so this question might seem silly but, in my pipeline I recently added Edit Objects Manually, due to the differences I see between the serial sections I am analyzing currently.

When testing this new pipeline an error came up after the Edit Objects Manually:

File “cellprofiler\gui\pipelinecontroller.pyc”, line 897, in do_step
File “cellprofiler\modules\editobjectsmanually.pyc”, line 229, in run
NameError: global name ‘cpi’ is not defined

Since I do not have a background in programing I am unsure how to resolve the error. I have attached my current pipeline for further assistance 101103M10Kid.cp (14.3 KB).

Any suggestions would be appreciated!



Hi Danielle,

This is a bug in the outline saving, which will be corrected in the next release. The workaround is to uncheck the “Retain outlines…” setting.