Editing CellProfiler batch file

Dear all,

I’m new to CellProfiler and currently trying to set up pipeline for processing of images using cluster. The problem I run into is setting path to images in batch file. In particular my problem is that when I create batch file I use windows OS, while Linux is run on the cluster. Thus my image paths in batch file would look like D:/Images while I need to have /home/user/images for batch to access images on cluster.

Is there a way to solve that? Would I have to create batch file using the cluster version of CellProfiler?

Cheers

The CreateBatchFiles module (name might be slightly different, this is from memory) has some input fields for path translation.

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Thanks! Totally missed the option. This seem to do exactly what I wanted.