I am a beginner with ImageJ, and I need your help.
My aim is to quantify amyloid plaques in brain slices. I have done a macro that works and give me the good results (yeah !!). But, I would like to be able to select an area, and get a table with only the infos of the plaques inside this area.
For example I would like a table with all the numbers in the cortex (yellow area) and another with all the numbers in the hippocampus (green area). If the summary of those tables could appear in the summary window too, it would even be better !
I tried to do the areas before doing the analysis (one after the other), but the lines are counted as plaques, so it doesn’t really work. (Did I mess something up at some point ?)
Please help me !