I am currently evaluating QUPath as a means to open large multi-pyramid .tifs and export specific regions to ImageJ. It looks like it is specifically designed for this kind of thing.
However, I need to specify the coordinates of ROIs in a list, preferably via a macro, then save and/or export each one. I tried drawing ROIs with the command recorder open to try and understand how to script ROI generation, however it did not seem to record the ROI commands (it recorded ‘runPlugin(…lIntensityFeaturesPlugin)’ and other commands, but not the command to draw an RIO).
How do I specify a specific ROI in a script??