The error is happening in the library (vigra) we use to write tiffs. I haven’t been able to track down the exact cause just yet. I think the only workaround now would be to export to hdf5 and then maybe write a fiji macro that does the conversion?
that’s unfortunate. So reading the image might be the problem. Are you reading tiff files? If so can you open this particular image in ilastik without problems?
Really puzzling, but getting to the root of this would be really good.
Hi djpbarry, thanks for providing the data, I can definitely reproduce it. So far I can tell you, that ilastik seems to have a problem with your probabilities file --> it will hang when you try to go to the last time slice - So I’m looking into this now - fiji seems to be able to open the prob file just fine, so the problem is likely on our side (or with one of our tiff reading libs).