Hi all, colleagues at CIML are doing multiplexed images with up to 10 different channels, acquired with ZEN -
Keeping track of which channel corresponds to which molecule is essential.
Bioformats and omero are pretty good at importing the metadata, but a key element, the name of each channel, is buried in the
Experiment|AcquisitionBlock|MultiTrackSetup|TrackSetup|Name entries of the original metadata.
Does any one know how to have this info as the channel name instead? Ideally at acquisition time in ZEN settings, but I’ll take a post processing solution also!
Thank you for any insight,