Hi, this is my first post, as well as my first time ever using Fiji. I have an histological cross section of a femur, and am trying to section it into 8 equal sectors and 3 concentric rings (image of what it should look like). I ultimately would like to quantify the distribution within each of these sectors.
I’m been looking around the forum and have been unsuccessful attempting to do this in Fiji. The closest post I’ve found was this one one… I can get it to run, but the circle is quite small (although I think this may be a user error) and includes the center cavity, which is ultimately nothing/background.
Overall goal is to apply a LUT (which I have successfully done) and quantify the pixels/colors in each sector. I’d be happy to settle for just he 8 slices and not the 3 rings, but I figured while I’m here I would ask!
This is my first post, so I’ll post reference images below.
I do have a chunk of old Optimas code, but I haven’t quite figured out how to use it in Fiji. I am not the original creator of this code though.