Create and use subpipelines


I would like to know if there is a way to import an existing pipeline as a ‘subpipeline’ in a project. That way I could save the different operations I frequetly use and import them when needed.

Thank you!

Just to clarify: By “project”, do you mean a CellProfiler project (.cpproj) file, or in terms of a generic workflow using 3rd -party software (e.g, MATLAB, etc)?


Also note that you can disable particular modules by simply clicking the green check-mark, which then the pipeline skips. See attached screenshot displaying the Morph module disabled. You could enable/disable modules in a “master” pipeline and change the functionality to your wishes.

But I agree with Mark that you might need to clarify further what you want.

Hope that helps,