After Cell Profiler segment my Objects I exported the Data to a Database (SQLite), creating the corresponding “properties” file for CPanalyst.
In fact I still don’t have to much Images (about 3 for each assay condition)
I was trying the CPA software and I have some questions/comments:
a) Is it possible to “customize” our plots? (colors, Titles, Axis labels)
b) I couldn’t find the brush tool (as I saw in the example movie); well, in the scatter plot it is possible to make some kind of selections but are not displayed in the other plots.
c) I also saw that the user interface has changed from the video tutorial version to the last released version of CPA.
d) There’s some limitations by using a SQLite instead of MySQL?