CP technique to track / relate objects in Z-slice

Hey Guys,

 Is there any ways to get CP to track / relate objects in a z-slice dataset? I have a 512image stack with an average of 5 cells which persist over ~15 frames that I'd like to count and gather statistics etc on. The cells are not moving around from slice to slice.


Hi Joshua,

At this point, CellProfiler is not equipped to handle 3-D datasets as such. However, the users in this post and this post ask similar questions, for which we provide possible CellProfiler approaches.


Hi Joshua!

I’m moreless working on that at this moment.

Depending on how much you can wait(schedule) I could tell when I get it going.

But I can anticipate that it is just an approach based at handling the info at the database level.