New to Qupath. I looked into other topics but I cant seem to figure out how to get it working.
Im working with H&E stains. I would like to count different types of cells manually within a pre-defined area size. I made an annotation of the preferred size and duplicated it 10 times. With the counter I counted the different kind of cells. However, I can’t get the count per annotation. I read that I need to convert my counter annotations to get it working but I cant seem to get it working. Also, there is a script available Cell summary measurements to annotation.groovy . However, it gives me an error so I cant run it.
all help is appreciated,