I’m trying to count one class object (as the “Analyze Particle” in Fiji) using ilastik. I’m working on a set of seed images.
Firstly, the pixel classification works well and i got my set of prediction images.
Could I process the image analysis on Ilastik using the object classification? My aim is to the get number of seeds on images and some characteristics as the area, the minor and major axis (like Fit Ellipse on Fiji).
When I try the Object Classification tool of Ilastik, I can’t define one objet as seed on my thresholded image…
Should I process the prediction image on Fiji? I’d like to do all the process on Ilastik and get the same results as Analyze Particle with Fit Ellipse option on Fiji…
If I had to move on Fiji after the pixel classification, can I use my prediction images files (.h5)?