I’ve been setting up a pipeline to count cells from IHC slides. My final goal would be to run the pipeline on a large number of slides and have for each slide the number of cells stained with DAB out of the total number of cells.
Everything works already quite fine, I was able to identify the total number of cells and then used ClassifyObjects to separate DAB stained cells from the rest. My problem is that I can’t figure out a way to get in the end the raw number of objects per bin on a image basis. In ExportToSpreadsheet I found the possibility to export for every object whether it is in one bin or the other but I found no possibility to access the number of objects per bin as it is displayed in the graph output of ClassifyObjects.
Would be great if you could help me with this! I attached the pipeline I created so far.
IHC.cp (9.07 KB)