I’m trying to convert .svs file into a tiff using SlideJ on ImageJ. Does anyone know how to do this or have another way to convert image files.
If someone out there have similar requirement. You can try this GUI application that I wrote for my personal use to batch convert svs files to tif files. It uses libvips, NetVips and OpenSlide. It also has option to write OME-TIFF that are compatible with QuPath.
I have only tested it on a few bright-field svs and scn files, so expect it to have a few bugs and few unsupported files.
Dropbox Link: SVS2TIFF