Here is a very typical problem I’m facing and probably others will face.
I had designed a complete pipeline for images from High-content Imaging.
Recently, with new developments, we are using Confocal Imaging and so, the images are in ‘lsm’ format with a database structure.
Is there any way, by which I can read these LSM images in CellProfiler and can convert them into bmp/tiff formats for each of the channel.
I’m using three channels for the experiments.
Your guidance will be great in solving this issue.