Convert cell counter markers to multi-point

fiji
imagej
multi-point
cell-counter

#1

I have some labeled cell data in the form of cell counter xmls, is there a way to turn this into multi-point markers? I would be using this for cell detection with the U-net plugin


#2

Welcome to the forum, @xun468!

You’ll have to use a script to parse the XML and create a new PointRoi from it.

Here’s a Groovy script that does this (run it from the script editor):


#3

This is incredible! Thank you so much