Conversion from confocal microscope .cz to h5 file

I have .czi files and i want to convert to h5. is there a tool that i can used.
secondly Is there any annotation tool used for stacks.

Hi @Sajid_Ullah
You could try the ilastik/imageJ plugin


It has an Export to hdf5 option.
It depends if the hdf5 file generated is suitable for what you need to do afterwards.
For example, that flavour of HDF5 file is not supported by Bio-Formats.

Cheers
Jmarie

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