I hope the microscopy analysis community finds this new Nature Protocols tutorial paper to be a useful resource, particularly for students getting started with confocal and related microscopies. The analysis section should point people in the right direction when they are ready to start working with their images. In fact, we recommend trying out some analysis as part of a pilot project before even embarking on full-scale imaging!
Tutorial: guidance for quantitative confocal microscopy
Unfortunately, Nature Protocols does not offer true Open Access, but you can view the paper with this SharedIt link (or email me and I can send you a PDF):