Comparaison of some tools for 3D dense ground truth annotations

And you might consider this one:

2 posts were split to a new topic: Opening TIFF images using ITK-SNAP

I think also WebKnossos should be here.

Thank you for this post! It is a very nice collection of tools.

@constantinpape and others,

I’m trying out several of these 3D annotation tools for a new project (I’m a postdoc in Anne Carpenter’s group at the Broad). I’d like to test out Paintera but am indeed finding the learning curve quite steep.

Does anyone know if any documentation / video tutorials have been created for usage? It would be a big help for me!

Cheers,
Pearl

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@axtimwalde and @igorpisarev , any good “Paintera for beginners” resources you can point us to? Thanks so much, it seems super cool and we’d love to dig in!

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Not yet. We are working on it. @igorpisarev works for Google now and we had a bit of a maintenance gap for the second half of 2020.

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Totally understandable, good luck and we look forward to whatever you guys put together!