Command line to generate a batch process

cellprofiler

#1

Given a set of files and a pipeline, is there a way to create at the Matlab_command_line a batch file that will run the pipeline over
these images ?

Thanks a lot.


#2

Hi,

Sorry it has taken so long to respond. You can use the CreateBatchFiles script as if you are going to use a cluster of computers to run your analysis. Once the first set is done, it will write .m files to your output folder. You can direct your MATLAB prompt to this folder and run each m-file as an individual script.

Mike