Change orientation of slices

Hello,

I would like to change the orientation of the stack of volumes I have. I have attached a PDF which explains the question. Currently, the z-slices go through the image (denoted by the red dot). I would like to orient it in a way that I when I move the slice bar (at the bottom of the volume viewer), it goes in the direction shown by the dotted arrow. I have also attached a volume of 4 images as an example.

Thank you for your help!

IMAGEJ_HELP_2.zip (15.7 MB)

Kind Regards,
Som

Hi @somsubhro,

Some follow up questions:

  1. Are you using ImageJ?
  2. Your zip file has a file test.raw - what size is it / how should one open it?

John

Hello @bogovicj

Apologies, here are my answers -

  1. Yes.
  2. I’m so sorry I forgot to give the details. It is 600 x 400 x 100 x 8 bit. The resolution is 0.0075 mm.

PS - Please download it again (if you downloaded it earlier). I have adjusted the raw file and the PDF slightly.

Thank you.
Kind regards,
Som

Hi, @somsubhro

I have not understood your question completely, but I tried to make an image.
Please check the file.
CrossSectionStackXZ.tif.zip (18.7 MB)
Is it like this?

First, I rotated the image using Image > Transform > Rotate…
Then, reconstruct the image.(reslice macro, plugin and so on)
In this time, I used customized my plugin.

hwada

That worked! Thank you so much :slight_smile: