I’m trying to get CellProfiler running from source, so that I can work further with custom plugins for it. I have managed to get the program itself running, however when I actually run a pipeline CellProfiler does nothing. CPU usage remains at zero and the pipeline’s time estimation simply climbs forever. I know that the pipeline works because I’ve used it with the 3.18 binary installed from the CellProfiler website.
When run in the from-source version, the console messages get as far as Starting workers on address tcp://127.0.0.1:52564, then it sits until I stop the analysis. Only when I do so do I recieve further messages such as Worker 0: Starting job - unlike the binary install, where these appear unprompted and the processing actually gets underway.
I am using the 2eea5ee commit version of CellProfiler, as this appears to be the 3.1.18 release and therefore should be the same as the binary installation.