Cellprofiler: Single Cell Images from Multi-Cell Images


I have images containing the whole culture of cells. After performing the segmentation using CellProfiler and obtaining the objects, is it possible to save the images of every object individually? That is, I want to get single-cell images from multiple-cell images.


Not familiar with doing this outside of QuPath, but this might point you in the right direction.

You should look at the module called "SaveCroppedObjects’


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Thanks. Yeah, that will work. Thanks once again. I don’t know how I missed that module.