I am aware of this plugin which calls ilastik:
I haven’t tried it myself. Maybe the Cellprofiler team can give you additional information.
- Has the predict plugin been recently tested?
- How do you add a plugin to CellProfiler?
I have never tried to use it with cp3, but would be very interested in how this turns out. So in case you give it a go, please give me a call so I can sit in