I have been using Cellprofiler wormtoolbox pipelines to analyze the C. elegans fat content in the past few years, and I kept running into the issue that Cellprofiler somehow pause analyzing without any error messages or notifications, this often happens to the last few images, and the issue persists in every version of cellprofiler from 2.2.0 to 4.1.3, and I tried running on many different PCs with OS of windows 7 and windows 10, and all of them ran into this same issue. I am wondering if there is a solution to solve this problem. The only way to make it finish the pipeline is to remove the last few images and rerun the pipeline.
Here I am providing an example:
This is a screensnap of a current pipeline I am running and it stuck at the image 33/34 for 3h already. The typical time for a successful run of 40 images usually takes only ~1h.
And it shows no error messages or any sign of the issue here.
This is the screensnap of the pipelines.
Hope anyone could help with this issue.