First of all i have to mention that i am a new user of cellprofiler and my experience therefore is limited. I am currently using CP 4.1.3. In my analyis, i am analysing roughly 200.000 images with 4 images per image set i.e. 50.000 image sets. Since CP 4.1.3 does not use the HDF5 file format anymore but the more accessible database type SQLite by using the ExportToDatabase module at the end of my project pipeline. I am experiencing long wall_time (image below). When i run only a selection of imagesets, lets say 50, i am not experiencing these long wall_time. Does anyone maybe have a tip or trick to reduce the wall_time in the exportToDatabase module when running a large amount of image sets? The long wall_time is really slowing down my analysis.
Many thanks in advance!
Hugo van Kessel