Hi, CellProfiler Team and everyone
I am running into an issue where my pipeline works fine when run for a small image sets, But when I run more image set (about 60 image sets), MemoryError occurs during run of module MeasureObjectSizeShape. My image size is 2048×2048, an image set has 2 images. My computer has an 8-core processor and 16GB RAM.
Here is the error log information:
When I reduce the worker to 2 and change the Java memory to 4096 MB, the pipeline can run well, but it runs very slowly. So is there any other better method that can improve the analysis speed and avoid MemoryError.
If you can provide me with any suggestions, I would really appreciate it!
Thank you very much!