I am trying to combine a Z stack(11) into one 2D projection. I have a total of 21,120 images. 11 images per set/group. so it leaves me with 1920 image sets. Thus in the end a total of 1920 2D projections should be created. However, CellProfiler stops in the middle of executing my pipeline after generating 190 2D projections. The pipeline is very simple, it just groups and creates a projection based on Average intensity. (Attached below for reference)
I thought there was something wrong with the 191 image set, so I ran the pipeline for just that image set and it worked fine. I can’t seem to figure out why it crashes.
Can someone please help me out. Thanks in advance2D_trial.cpproj (675.0 KB) !