I am very new to CellProfiler, but have been struggling for a long time with the following error when trying to to 3D nuclei and cell segmentation:
Error while processing Watershed: numpy boolean substract, the ‘-’ operator, is deprecated, use the bitwise_xor, the ‘^’ operator, or the logical_xor function instead.
I have been following step-by-step several CellProfiler tutorials, such as this one (https://github.com/CellProfiler/tutorials/blob/master/3d_monolayer/3d_monolayer_final.cppipe) and this is where I get the error above.
As a result, the segmentation process is very incomplete and I can’t get any results.
Do you know where exactly is the problem?
Thanks in advance,