I am getting below output in a 3D CellPose segmentation:
I wonder whether there may be a parameter in CellPose that would impose a certain smoothness of the label mask, in order to avoid this very pixelated response in the central cell.
In fact, now writing this question, I wonder whether you would recommend smoothing the gray values in the input image? Normally I don’t pre-process images that are the input to deep learning algorithms, assuming that the smoothing is part of the DCNNs…
Thank you for your help!