Sorry for all the issues you’re having!
I haven’t seen the crashes you’re having before, but I’ve only tested extraction of lots of cubes on two very similar machines. It should work for any number of cubes, as long as you have the RAM to store 2 x 100um of image planes. It might be a while until I can look at this, but I’ve raised an issue here.
There’s definitely a bug with napari-cellfinder with napari version 0.4.8. Will need to fix that. I’ve raised an issue here.
Would you mind testing the cube extraction on version 0.4.8 to see if anything has improved? If you can’t mark new cells as training data, you could just load an existing xml file and set it to the be training data.
the selection tool seem to have acquired the ability to move points (a behaviour new to me and unwanted for this particular task)
@sofroniewn - Would setting
editable=False prevent this? I’d like to be able to toggle this behaviour.
great to have an option for highlight thickness, but the default value of 1 pixel seriously confused me until I found it.
It would be great to have an option to change this. The new thickness makes it very hard to see selected points sometimes.