Can cellfinder be called without an atlas?
Yep, you can use the command line tool with the
—no-register flag, or use the napari plugin.
Awesome, is there a similar syntax for lacking an autofluorence channel? Haven’t gotten in the data we’ll be using, so just trying to play around with cellfinder
Not yet, at the moment both channels are needed for cell detection. We’re working on a single channel version.